PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_11737-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 204aa    MW: 22327.9 Da    PI: 4.7243
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_11737-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  TRIUR3_11737-P1 14 RGPWSPEEDAMLKAYIEERGTGnNWIALPHKIGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-20565IPR009057Homeodomain-like
PROSITE profilePS5129419.261966IPR017930Myb domain
SMARTSM007171.3E-101364IPR001005SANT/Myb domain
PfamPF002491.5E-131462IPR001005SANT/Myb domain
SuperFamilySSF466896.41E-191588IPR009057Homeodomain-like
CDDcd001671.02E-81662No hitNo description
Gene3DG3DSA:1.10.10.602.5E-66687IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRAPCCDKA TVKRGPWSPE EDAMLKAYIE ERGTGNNWIA LPHKIGLKRC GKSCRLRWLN  60
YLRPNIKHGD FTPEEDSIIC KLYISIGSSR SSSLDVTVAA EQGQSSSLND QHLGGQQQLE  120
MTAAADGLAS PSSAGNSNMV TIEAELQELL YSTTTTTTTD SVVTQQGGVD WWSYDQGKSP  180
VHCWDFAPET SSVLQDYAAV VYDM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117883e-82AK111788.1 Oryza sativa Japonica Group cDNA clone:J023093J22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573606.17e-59PREDICTED: transcription factor RAX3
SwissprotQ9SJL71e-51RAX2_ARATH; Transcription factor RAX2
TrEMBLM8AQ371e-153M8AQ37_TRIUA; Transcription factor RAX2
STRINGMLOC_56989.26e-61(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3692822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.12e-49myb domain protein 84